介绍

文档url: https://snakemake.readthedocs.io/

教程

https://snakemake.readthedocs.io/

模块化：

include: "path/to/other.snakefile"

子流程：

subworkflow otherworkflow:
    workdir:
        "../path/to/otherworkflow"
    snakefile:
        "../path/to/otherworkflow/Snakefile"
    configfile:
        "path/to/custom_configfile.yaml"

rule a:
    input:
        otherworkflow("test.txt")
    output: ...
    shell:  ...